java -Xmx16128m -cp "/var/www/html/trawler_standalone-2.0/lib/pecan.jar" bp.trawler.Trawler -E "/mnt/public_html/0x80D119ACEAEB11E787D02029A4A74ECD/downloads/sample.fa" -F "/mnt/public_html/0x80D119ACEAEB11E787D02029A4A74ECD/downloads/rand_bg.fa" -N "/mnt/public_html/0x80D119ACEAEB11E787D02029A4A74ECD/result/0x80D119ACEAEB11E787D02029A4A74ECD.trawler" -J 10 -G ACGTMRWSYKN -I 2
AGTGASTCACA	family_1	32.585308	11	1	1
AGTGASTCACR	family_1	35.58238	12	1	1
AGTGASTCRCA	family_1	32.585308	11	1	1
AATGSAATSGAAT	family_2	35.582626	12	1	1
AATRGAATSGAAT	family_2	32.585537	11	1	1
AATGGAATSGAWT	family_2	32.585537	11	1	1
AAYGGAATSGAAT	family_2	32.585537	11	1	1
AATGGAATSKAAT	family_2	32.585537	11	1	1
...ATGARTCAS..	family_3	34.092907	132	108	1
...ATGASTCATK.	family_3	34.59255	76	38	1
...ATGAMYCA...	family_3	33.01609	326	543	1
...ATGAMTSA...	family_3	35.333317	403	705	1
...ATGASTCAYCT	family_3	43.963337	21	2	1
...ATGACTCRYCT	family_3	32.585308	11	1	1
...ATGACTMAY..	family_3	37.423466	145	110	1
...ATGACWCAY..	family_3	34.209564	141	121	1
...ATGMCTCA...	family_3	33.00918	207	252	1
...ATGASTCAGMC	family_3	32.585308	11	1	1
...ATGASTCAS..	family_3	40.54661	165	122	1
..GATGAMTCAYTT	family_3	32.58542	11	1	-1
...ATGACTMM...	family_3	32.784924	286	441	1
AGSATGAMTCAG..	family_3	32.58542	11	1	1
...ATGAMTYA...	family_3	33.848125	355	605	1
...ATGAMWCA...	family_3	32.889572	389	728	1
.AAATGASTCAYC.	family_3	41.57666	14	1	1
..AATGASTCAYC.	family_3	35.199913	24	4	1
..AATGAGTCAYC.	family_3	35.58238	12	1	1
...ATGAKTCR...	family_3	33.77911	222	275	1
...ATGMGTCARAC	family_3	32.585308	11	1	1
...ATGAGTCA...	family_3	38.566338	149	110	1
...ATGAGTCAK..	family_3	33.93865	91	55	1
...ATGMGTCA...	family_3	38.265438	158	124	1
...ATGAGTCARWC	family_3	38.57945	13	1	1
...ATGAGTCMRAC	family_3	32.585308	11	1	1
...ATGMGTCR...	family_3	34.517506	159	148	1
..GATGMGTCAT..	family_3	33.366978	16	2	-1
...ATGASKCAT..	family_3	38.451088	134	91	1
.AAATGMGTCAY..	family_3	33.367096	16	2	1
...ATGRSTCAT..	family_3	34.760715	135	109	1
...ATGMGTCAT..	family_3	36.755196	71	30	-1
...ATGACKCR...	family_3	40.274	202	178	1
AGSATGASTCAG..	family_3	35.5825	12	1	1
...ATGACWCA...	family_3	32.674294	228	302	1
.GRAYGAGTCAT..	family_3	41.57652	14	1	-1
.RRATGAGTCAT..	family_3	39.69552	27	4	-1
...ATGAGTCAY..	family_3	34.472733	95	58	1
.AAATGASTCWTC.	family_3	32.58542	11	1	1
...ATGASTCAKC.	family_3	33.313953	48	17	1
...ATGWSTCA...	family_3	44.988594	405	512	1
...ATGAGTCAT..	family_3	38.964195	71	27	-1
.AAATGRGTCAT..	family_3	35.58238	12	1	1
...ATGAMTCAY..	family_3	42.886795	182	133	1
...ATGACTCAYC.	family_3	38.635468	35	7	1
...ATGACKCA...	family_3	41.789986	192	153	1
...WTGMGTCAT..	family_3	33.118	99	67	-1
...ATGASTYAT..	family_3	33.78899	142	125	1
...ATGASTCRT..	family_3	43.370144	127	67	1
..SAWGAGTCATTT	family_3	32.58542	11	1	-1
...ATGMSTCAT..	family_3	39.489105	134	87	1
...ATGASTSAT..	family_3	34.29122	140	119	1
...ATGASYCA...	family_3	43.94994	383	481	1
...ATGAGTCAKMC	family_3	38.57945	13	1	1
...ATGMRTCA...	family_3	33.285866	276	407	1
.AAATGARTCAYC.	family_3	35.5825	12	1	1
...ATGARTCAY..	family_3	36.163784	160	139	1
.AAATGAGTCAYY.	family_3	38.57958	13	1	1
...ATGACKCM...	family_3	33.816	225	281	1
...ATGACKCAYC.	family_3	33.818302	35	9	1
...ATGWCTCAY..	family_3	33.99602	135	113	1
...ATGASTCAY..	family_3	56.56922	212	110	1
.AAATGASTCRT..	family_3	33.701378	23	4	1
.AAATGAGTCRT..	family_3	35.58238	12	1	1
...ATGMGTCAK..	family_3	32.83556	95	63	1
...ATGAKTCA...	family_3	35.94235	220	247	1
...ATGAKTCASAC	family_3	32.585308	11	1	1
...ATGRSTCA...	family_3	41.01103	365	489	1
...ATGASTCAKCC	family_3	35.58238	12	1	1
...ATGASTSA...	family_3	42.5687	402	547	1
.AAATGMGTCRT..	family_3	38.57945	13	1	1
...ATGASWCAT..	family_3	34.088913	150	136	1
.AAATGMGTCAT..	family_3	38.57945	13	1	1
...ATGACTCR...	family_3	41.547688	191	153	1
...ATGACTCAYCY	family_3	59.558945	20	1	1
...ATGAMTCA...	family_3	42.560986	288	307	1
...ATGARTCAT..	family_3	34.15285	101	66	-1
...ATGACTCA...	family_3	42.38125	183	137	1
.AARTGAGTCATY.	family_3	33.367207	16	2	1
...ATGASTCAYTT	family_3	33.97388	39	11	-1
...ATGASTCR...	family_3	54.617023	340	279	1
..AATGASTCA...	family_3	34.48208	110	76	1
...ATGMSTCA...	family_3	48.9982	365	376	1
AGSATGACTMAG..	family_3	32.58542	11	1	1
...ATGACTYA...	family_3	33.67352	211	253	1
...ATGMCTCAY..	family_3	34.10353	130	105	1
...ATGRCTCAY..	family_3	32.666725	129	111	1
...ATGACTCM...	family_3	34.89343	212	242	1
..SATGAGTCAT..	family_3	33.857418	37	10	-1
...AYGARTCAT..	family_3	32.862335	103	73	-1
.AAATGAKTCATY.	family_3	38.57958	13	1	1
...ATGAKTCAY..	family_3	35.123775	139	113	1
...ATGANTCA...	family_3	55.682358	508	554	1
...ATGASTCASC.	family_3	33.313953	48	17	1
...ATGASTCW...	family_3	43.55133	391	505	1
...ATGASTCMT..	family_3	35.39018	144	119	1
...ATGANTCAT..	family_3	41.217503	191	155	1
...AYGMGTCAT..	family_3	35.8884	73	33	-1
...ATGAMTCR...	family_3	42.2871	301	335	1
...ATGAMTCAS..	family_3	32.803936	145	136	1
...ATGAMKCA...	family_3	34.587353	328	516	1
...ATGACTCRY..	family_3	44.704563	121	58	1
...ATGACTMA...	family_3	38.836056	240	256	1
...ATGACTCAY..	family_3	45.869057	117	52	1
...ATGASTCM...	family_3	45.697002	375	438	1
...ATGAGTCARMC	family_3	41.57652	14	1	1
...ATGAGTCR...	family_3	35.489403	149	126	1
.GRATGMGTCAT..	family_3	41.57652	14	1	-1
...ATGASTCAK..	family_3	49.082005	205	132	1
...ATGASTCATY.	family_3	37.165527	73	31	1
WGAATGARTCAT..	family_3	32.58542	11	1	-1
..AATGASTCR...	family_3	32.5141	113	88	1
..AATGANTCA...	family_3	35.30166	181	180	1
.AAATGANTCATC.	family_3	35.5825	12	1	1
...ATGASTCAYC.	family_3	43.426033	60	16	1
...ATGASTCATCY	family_3	39.72484	19	2	1
...ATGASTCAW..	family_3	40.687885	167	124	1
...ATGASYCAT..	family_3	36.870876	138	103	1
...AYGAGTCAT..	family_3	38.011097	72	29	-1
...ATGWCKCA...	family_3	32.736027	231	308	1
...ATGACTSAY..	family_3	32.71425	133	117	1
...ATGAMTMA...	family_3	35.015625	404	716	1
...ATGACTCW...	family_3	33.417656	220	275	1
...ATGACTYAY..	family_3	34.029865	127	101	1
.AARTGAGTYATC.	family_3	32.58542	11	1	1
...ATGANTCAC..	family_3	37.19438	130	91	1
...ATGACTCACSY	family_3	32.585308	11	1	1
...ATGACKCW...	family_3	33.22922	233	306	1
...ATGACTCRK..	family_3	35.157814	119	85	1
...ATGACTCAK..	family_3	35.580036	114	77	1
...ATGACTMR...	family_3	35.915916	263	337	1
...ATGACKCAY..	family_3	43.467506	120	60	1
...ATGACKYA...	family_3	33.24475	225	288	1
...ATGACKMA...	family_3	38.013	254	292	1
...ATGACTCAYM.	family_3	34.052383	60	25	1
...ATGRMTCA...	family_3	33.07518	325	539	1
...ATGACTCAYY.	family_3	38.606052	69	26	1
...ATGMCTCR...	family_3	32.51993	220	286	1
...ATGAYTCA...	family_3	39.65765	254	274	1
AGSATGACTCAK..	family_3	32.58542	11	1	1
...ATGAYTCAK..	family_3	34.124767	158	149	1
...ATGAMTCAK..	family_3	35.3728	175	169	1
.AAATGAGTCAT..	family_3	35.58238	12	1	1
...ATGACTCWY..	family_3	34.091465	136	114	1
...ATGACTCAYS.	family_3	43.401295	58	15	1
...ATGWMTCA...	family_3	33.37509	344	585	1
.AAATGWGTCATY.	family_3	38.57958	13	1	1
...ATGARTCA...	family_3	39.093307	254	280	1
...ATGAGTMA...	family_3	32.91983	207	253	1
...ATGMGTMACCT	family_3	32.585308	11	1	1
...ATGASTMA...	family_3	50.751183	447	509	1
...ATGASTCATYC	family_3	33.94474	20	3	1
...ATGWSTCAT..	family_3	34.97344	149	129	1
.AAATGRGTCRT..	family_3	35.58238	12	1	1
...ATGARTCAK..	family_3	32.93606	152	147	1
WGRATGAGTCAT..	family_3	32.58542	11	1	-1
.GRATGRGTCAT..	family_3	44.57359	15	1	-1
...ATGAYTCM...	family_3	33.724403	312	491	1
.GRATGAGTCAT..	family_3	41.57652	14	1	-1
...ATGAMTCW...	family_3	33.892048	346	579	1
...ATGMCKCA...	family_3	32.824547	219	280	1
...ATGACTCMY..	family_3	32.484425	129	112	1
...ATGAYKCA...	family_3	36.257023	296	407	1
...ATGACKCAK..	family_3	33.618847	115	86	1
...WTGAGTCAT..	family_3	32.76725	94	62	-1
...ATGARTCR...	family_3	37.51765	259	308	1
...ATGMGTCAY..	family_3	33.917538	102	68	1
...ATGASKCA...	family_3	45.548954	372	434	1
...ATGASTMAT..	family_3	39.430195	168	132	1
...ATGASTCWT..	family_3	33.168373	150	142	1
...ATGASTCAT..	family_3	45.789013	126	60	1
..GATGAGTCAT..	family_3	33.366978	16	2	-1
...ATGAYTCAY..	family_3	42.691162	161	107	1
...ATGAMTCM...	family_3	35.42268	332	510	1
...ATGACYCAY..	family_3	33.754467	124	98	1
...ATGASWCA...	family_3	41.945686	414	587	1
...ATGASTCAC..	family_3	33.746365	86	50	1
.AARTGWGTCATC.	family_3	35.5825	12	1	1
...ATGAYTCR...	family_3	38.882866	264	302	1
.RGATGRGTCAT..	family_3	38.57945	13	1	-1
...ATGMMTCA...	family_3	33.264736	325	535	1
...ATGWCTCA...	family_3	32.726788	218	279	1
...ATGAYTMA...	family_3	33.96012	344	572	1
...ATGACTAAGMY	family_3	32.585308	11	1	1
...ATGACTMAK..	family_3	36.039017	155	132	1
...ATGASTYA...	family_3	44.56946	388	482	1
...ATGASTCATS.	family_3	37.536354	63	23	1
...ATGASTCA...	family_3	57.30043	332	247	1
...ATGAGTMAY..	family_3	34.39601	131	105	1
.AAATGAKTCAYC.	family_3	32.58542	11	1	1