$ trawler.pl -sample /mnt/public_html/0x80D119ACEAEB11E787D02029A4A74ECD/GSM1536045_Bio_Sox15.bed -org hg19 -strand double -mlength 8 -overlap 70 -class vertebrates -dir_id 0x80D119ACEAEB11E787D02029A4A74ECD -phastcon 1 -masked 1

command line options
====================

sample=/mnt/public_html/0x80D119ACEAEB11E787D02029A4A74ECD/GSM1536045_Bio_Sox15.bed
org=hg19
strand=double
mlength=8
overlap=70
class=vertebrates
dir_id=0x80D119ACEAEB11E787D02029A4A74ECD

default options
===============

[motif discovery]
occurrence=10
wildcard=2

[clustering]
motif_number=200
nb_of_cluster=0

[visualization]
directory=/mnt/public_html/0x80D119ACEAEB11E787D02029A4A74ECD
xtralen=0
clustering=1
web=1

pipeline
========

trawler.pl => 9 minutes, 18 seconds
pipeline_trawler_01_som.pl => 4 minutes, 23 seconds
pipeline_trawler_02.pl => 9 minutes, 55 seconds
pipeline_trawler_03.pl => 4 seconds
Elapsed time => 23 minutes, 40 seconds